diff --git a/r/.footprint b/r/.footprint index f6aea0041..f7fc5a617 100644 --- a/r/.footprint +++ b/r/.footprint @@ -88,6 +88,38 @@ drwxr-xr-x root/root usr/lib/R/bin/exec/ -rwxr-xr-x root/root usr/lib/R/bin/mkinstalldirs -rwxr-xr-x root/root usr/lib/R/bin/pager -rwxr-xr-x root/root usr/lib/R/bin/rtags +drwxr-xr-x root/root usr/lib/R/doc/ +-rw-r--r-- root/root usr/lib/R/doc/BioC_mirrors.csv +-rw-r--r-- root/root usr/lib/R/doc/COPYRIGHTS +-rw-r--r-- root/root usr/lib/R/doc/CRAN_mirrors.csv +-rw-r--r-- root/root usr/lib/R/doc/FAQ +-rw-r--r-- root/root usr/lib/R/doc/KEYWORDS +-rw-r--r-- root/root usr/lib/R/doc/KEYWORDS.db +-rw-r--r-- root/root usr/lib/R/doc/RESOURCES +drwxr-xr-x root/root usr/lib/R/doc/html/ +-rw-r--r-- root/root usr/lib/R/doc/html/R.css +-rw-r--r-- root/root usr/lib/R/doc/html/Rlogo.pdf +-rw-r--r-- root/root usr/lib/R/doc/html/Rlogo.svg +-rw-r--r-- root/root usr/lib/R/doc/html/Search.html +-rw-r--r-- root/root usr/lib/R/doc/html/SearchOn.html +-rw-r--r-- root/root usr/lib/R/doc/html/about.html +-rw-r--r-- root/root usr/lib/R/doc/html/favicon.ico +-rw-r--r-- root/root usr/lib/R/doc/html/index.html +-rw-r--r-- root/root usr/lib/R/doc/html/left.jpg +-rw-r--r-- root/root usr/lib/R/doc/html/logo.jpg +-rw-r--r-- root/root usr/lib/R/doc/html/packages-head-utf8.html +-rw-r--r-- root/root usr/lib/R/doc/html/packages.html +-rw-r--r-- root/root usr/lib/R/doc/html/resources.html +-rw-r--r-- root/root usr/lib/R/doc/html/right.jpg +-rw-r--r-- root/root usr/lib/R/doc/html/up.jpg +drwxr-xr-x root/root usr/lib/R/doc/manual/ +drwxr-xr-x root/root usr/lib/R/doc/manual/images/ +-rw-r--r-- root/root usr/lib/R/doc/manual/images/QQ.png +-rw-r--r-- root/root usr/lib/R/doc/manual/images/ecdf.png +-rw-r--r-- root/root usr/lib/R/doc/manual/images/fig11.png +-rw-r--r-- root/root usr/lib/R/doc/manual/images/fig12.png +-rw-r--r-- root/root usr/lib/R/doc/manual/images/hist.png +-rw-r--r-- root/root usr/lib/R/doc/manual/images/ice.png drwxr-xr-x root/root usr/lib/R/etc/ lrwxrwxrwx root/root usr/lib/R/etc/Makeconf -> /etc/R/Makeconf lrwxrwxrwx root/root usr/lib/R/etc/Renviron -> /etc/R/Renviron @@ -230,6 +262,31 @@ drwxr-xr-x root/root usr/lib/R/library/Matrix/data/ -rw-r--r-- root/root usr/lib/R/library/Matrix/data/CAex.R -rw-r--r-- root/root usr/lib/R/library/Matrix/data/KNex.R -rw-r--r-- root/root usr/lib/R/library/Matrix/data/USCounties.R +drwxr-xr-x root/root usr/lib/R/library/Matrix/doc/ +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Announce.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Comparisons.R +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Comparisons.Rnw +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Comparisons.pdf +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Design-issues.R +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Design-issues.Rnw +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Design-issues.pdf +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Intro2Matrix.R +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Intro2Matrix.Rnw +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Intro2Matrix.pdf +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Introduction.R +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Introduction.Rnw +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/Introduction.pdf +drwxr-xr-x root/root usr/lib/R/library/Matrix/doc/SuiteSparse/ +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/SuiteSparse/AMD.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/SuiteSparse/COLAMD.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/SuiteSparse/SPQR.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/SuiteSparse/SuiteSparse_config.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/SuiteSparse/UserGuides.txt +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/index.html +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/sparseModels.R +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/sparseModels.Rnw +-rw-r--r-- root/root usr/lib/R/library/Matrix/doc/sparseModels.pdf drwxr-xr-x root/root usr/lib/R/library/Matrix/external/ -rw-r--r-- root/root usr/lib/R/library/Matrix/external/CAex_slots.rda -rw-r--r-- root/root usr/lib/R/library/Matrix/external/KNex_slots.rda @@ -784,6 +841,22 @@ drwxr-xr-x root/root usr/lib/R/library/grid/R/ -rw-r--r-- root/root usr/lib/R/library/grid/R/grid -rw-r--r-- root/root usr/lib/R/library/grid/R/grid.rdb -rw-r--r-- root/root usr/lib/R/library/grid/R/grid.rdx +drwxr-xr-x root/root usr/lib/R/library/grid/doc/ +-rw-r--r-- root/root usr/lib/R/library/grid/doc/DivByZero.txt +-rw-r--r-- root/root usr/lib/R/library/grid/doc/changes.txt +-rw-r--r-- root/root usr/lib/R/library/grid/doc/displaylist.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/frame.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/grid.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/grobs.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/interactive.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/locndimn.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/moveline.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/nonfinite.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/plotexample.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/rotated.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/saveload.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/sharing.pdf +-rw-r--r-- root/root usr/lib/R/library/grid/doc/viewports.pdf drwxr-xr-x root/root usr/lib/R/library/grid/help/ -rw-r--r-- root/root usr/lib/R/library/grid/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/grid/help/aliases.rds @@ -1052,6 +1125,8 @@ drwxr-xr-x root/root usr/lib/R/library/parallel/R/ -rw-r--r-- root/root usr/lib/R/library/parallel/R/parallel -rw-r--r-- root/root usr/lib/R/library/parallel/R/parallel.rdb -rw-r--r-- root/root usr/lib/R/library/parallel/R/parallel.rdx +drwxr-xr-x root/root usr/lib/R/library/parallel/doc/ +-rw-r--r-- root/root usr/lib/R/library/parallel/doc/parallel.pdf drwxr-xr-x root/root usr/lib/R/library/parallel/help/ -rw-r--r-- root/root usr/lib/R/library/parallel/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/parallel/help/aliases.rds @@ -1084,6 +1159,14 @@ drwxr-xr-x root/root usr/lib/R/library/rpart/data/ -rw-r--r-- root/root usr/lib/R/library/rpart/data/Rdata.rdb -rw-r--r-- root/root usr/lib/R/library/rpart/data/Rdata.rds -rw-r--r-- root/root usr/lib/R/library/rpart/data/Rdata.rdx +drwxr-xr-x root/root usr/lib/R/library/rpart/doc/ +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/index.html +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/longintro.R +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/longintro.Rnw +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/longintro.pdf +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/usercode.R +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/usercode.Rnw +-rw-r--r-- root/root usr/lib/R/library/rpart/doc/usercode.pdf drwxr-xr-x root/root usr/lib/R/library/rpart/help/ -rw-r--r-- root/root usr/lib/R/library/rpart/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/rpart/help/aliases.rds @@ -1298,6 +1381,42 @@ drwxr-xr-x root/root usr/lib/R/library/survival/data/ -rw-r--r-- root/root usr/lib/R/library/survival/data/Rdata.rdb -rw-r--r-- root/root usr/lib/R/library/survival/data/Rdata.rds -rw-r--r-- root/root usr/lib/R/library/survival/data/Rdata.rdx +drwxr-xr-x root/root usr/lib/R/library/survival/doc/ +-rw-r--r-- root/root usr/lib/R/library/survival/doc/adjcurve.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/adjcurve.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/adjcurve.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/approximate.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/approximate.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/approximate.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/compete.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/compete.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/compete.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/concordance.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/concordance.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/concordance.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/index.html +-rw-r--r-- root/root usr/lib/R/library/survival/doc/multi.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/multi.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/other.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/other.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/population.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/population.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/population.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/splines.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/splines.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/splines.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/survival.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/survival.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/survival.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/tiedtimes.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/tiedtimes.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/tiedtimes.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/timedep.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/timedep.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/timedep.pdf +-rw-r--r-- root/root usr/lib/R/library/survival/doc/validate.R +-rw-r--r-- root/root usr/lib/R/library/survival/doc/validate.Rnw +-rw-r--r-- root/root usr/lib/R/library/survival/doc/validate.pdf drwxr-xr-x root/root usr/lib/R/library/survival/help/ -rw-r--r-- root/root usr/lib/R/library/survival/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/survival/help/aliases.rds @@ -1717,6 +1836,8 @@ drwxr-xr-x root/root usr/lib/R/library/utils/R/ drwxr-xr-x root/root usr/lib/R/library/utils/Sweave/ -rw-r--r-- root/root usr/lib/R/library/utils/Sweave/Sweave-test-1.Rnw -rw-r--r-- root/root usr/lib/R/library/utils/Sweave/example-1.Rnw +drwxr-xr-x root/root usr/lib/R/library/utils/doc/ +-rw-r--r-- root/root usr/lib/R/library/utils/doc/Sweave.pdf drwxr-xr-x root/root usr/lib/R/library/utils/help/ -rw-r--r-- root/root usr/lib/R/library/utils/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/utils/help/aliases.rds diff --git a/r/.signature b/r/.signature index 83489a575..ba795ecfd 100644 --- a/r/.signature +++ b/r/.signature @@ -1,7 +1,7 @@ untrusted comment: verify with /etc/ports/contrib.pub -RWSagIOpLGJF3zHplZ3ryKpyRZ2aqBMkPIHTi2TI4EgzuG/GQNeSELFAlrElElWbSLdGx/WwTlIP7GCaYTZ0IUjt1IpXFDkGswI= -SHA256 (Pkgfile) = 6b9bc9527c44c5121803e8bcf2c47c45c0c982d3a572e8f87692fb9e41c8539f -SHA256 (.footprint) = 4255b79956909b6fec37491dafb5141385b1c982ec378877f2d0caaee8a3e756 +RWSagIOpLGJF39ChFI6ln8ii4/SEj2l9kbUxw5wqPK33iZSXHa+XCVxffb9MUTOKDWUy3IKP+qBl82kS8mPtjnNk6qQls2gQxws= +SHA256 (Pkgfile) = 82f55f0ff4b924f629df27efb3ccd6e372daeff269313db8fd1af7f43481c1c6 +SHA256 (.footprint) = e2b6dd2da40317845871f0a1672fb65facf0ab579a4ac0df039d409b261a8c8c SHA256 (R-4.0.0.tar.gz) = 06beb0291b569978484eb0dcb5d2339665ec745737bdfb4e873e7a5a75492940 SHA256 (r.desktop) = 25b01ea93fa704884b65ba002d44d4e99725bd826997e8c73b6467df9f23c798 SHA256 (r.png) = 465b623f15d8144fb30b52791047a22302c275d51f749d8732454e4496c1a989 diff --git a/r/Pkgfile b/r/Pkgfile index 3aa5ee5c2..bb7f440a0 100644 --- a/r/Pkgfile +++ b/r/Pkgfile @@ -6,7 +6,7 @@ name=r version=4.0.0 -release=1 +release=2 source=(https://cran.r-project.org/src/base/R-4/R-$version.tar.gz r.desktop r.png R.conf R-3.4.1-parallel.patch R-3.4.1-rmath-shared.patch @@ -92,9 +92,10 @@ build() { -iname '*THANKS*' -o \ -iname '*NEWS*' -o \ -iname '*LICENSE*' -o \ - -iname 'doc' -o \ -iname '*CHANGELOG*' \ \) -exec rm -r '{}' \+ || true - #doh! don't remove INSTALL or you won't be able to install R packages + ## doh! don't remove INSTALL or you won't be able to install R packages #-iname '*INSTALL*' -o \ + ## rstudio now depends on finding docs that R provides.. + #-iname 'doc' -o \ }