diff --git a/mysql/.footprint b/mysql/.footprint
index b79d584c9..4e883d38b 100644
--- a/mysql/.footprint
+++ b/mysql/.footprint
@@ -168,12 +168,8 @@ drwxr-xr-x	root/root	usr/share/man/man1/
 -rw-r--r--	root/root	usr/share/man/man1/myisamchk.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/myisamlog.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/myisampack.1.gz
--rw-r--r--	root/root	usr/share/man/man1/mysql-stress-test.pl.1.gz
--rw-r--r--	root/root	usr/share/man/man1/mysql-test-run.pl.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysql.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysql.server.1.gz
--rw-r--r--	root/root	usr/share/man/man1/mysql_client_test.1.gz
--rw-r--r--	root/root	usr/share/man/man1/mysql_client_test_embedded.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysql_config.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysql_config_editor.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysql_convert_table_format.1.gz
@@ -201,8 +197,6 @@ drwxr-xr-x	root/root	usr/share/man/man1/
 -rw-r--r--	root/root	usr/share/man/man1/mysqlman.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysqlshow.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/mysqlslap.1.gz
--rw-r--r--	root/root	usr/share/man/man1/mysqltest.1.gz
--rw-r--r--	root/root	usr/share/man/man1/mysqltest_embedded.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/perror.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/replace.1.gz
 -rw-r--r--	root/root	usr/share/man/man1/resolve_stack_dump.1.gz
diff --git a/mysql/.md5sum b/mysql/.md5sum
index bd0f4329c..da075784d 100644
--- a/mysql/.md5sum
+++ b/mysql/.md5sum
@@ -1,3 +1,3 @@
 1622e62c80d128f1951a12c0125d3fb5  my.cnf
-abcee03992647d508ac5c2568c6cc802  mysql-5.6.39.tar.gz
+ba337c0f41f11ed6875665e968c9e20f  mysql-5.6.40.tar.gz
 4f3967b521f810a0a9d7daa9c81bc85d  mysqld
diff --git a/mysql/.signature b/mysql/.signature
index 0f1844646..182b20fc5 100644
--- a/mysql/.signature
+++ b/mysql/.signature
@@ -1,7 +1,7 @@
 untrusted comment: verify with /etc/ports/opt.pub
-RWSE3ohX2g5d/ZKOYgJRgRvQmzt6ot7EuCUokaXuv+fMPsMDnAf4rRsdB40Ymcxh3bWJl4THE2963nIIJiwJo9mMTwnicLHdQwI=
-SHA256 (Pkgfile) = fa988a124398f6d5bc8dad3ad3f65005ce2a7e9036afc56e0801deb24435357c
-SHA256 (.footprint) = c7c7acd4f5a8fa9bc63673bb481bcded0bd8dee704a4684ae4cfe94c7270d17a
-SHA256 (mysql-5.6.39.tar.gz) = ab1814b03af77bf88dc381eff558ed2e73e19e8e5a4170a78ba3370cd5da434d
+RWSE3ohX2g5d/Q/P9fCTHvHJ0tCJe2Rmzg0zgA7eJqH0wSshZO6pzvx8HiYHomGo9b3hE9qnB5x5+oL0TntnkRd6WXiA1ZtnoA4=
+SHA256 (Pkgfile) = 6086d80a3681cbb0d07974398567f1fc97f35e4885181c3ae7d327511a418a06
+SHA256 (.footprint) = c2b175ddf10994ee8344c164faab46b889e7c80747aa9baae94744e1cd96e416
+SHA256 (mysql-5.6.40.tar.gz) = 1048a7abedba851efa62868e4d28d0be8828162b53903cd68e4f29546418d92d
 SHA256 (my.cnf) = 3802bb02f34adbfbd0cc6175f27f4646d66b38c1df4f9b6c1ff6e64e03ea717b
 SHA256 (mysqld) = e7bb2854c7ed9bec5a7dc74bde5db316cbdd31f190b81b21d9ac9b5aaf513157
diff --git a/mysql/Pkgfile b/mysql/Pkgfile
index 43d94274c..063ce3746 100644
--- a/mysql/Pkgfile
+++ b/mysql/Pkgfile
@@ -4,7 +4,7 @@
 # Depends on:  cmake libaio
 
 name=mysql
-version=5.6.39
+version=5.6.40
 release=1
 source=(http://mirror.switch.ch/mirror/mysql/Downloads/MySQL-5.6/$name-$version.tar.gz \
         my.cnf mysqld)